Omics pages of The Asteraceae Database available

Species pages can be accessed under the ‘Omics’ pull-down menu in the main navigation bar. Omics contains 14 subpages which were named after scientific name of species, users can easily access the data and tools for the species of interest.

The omics-species pages contain Basic Info. bar and Tools bar on the left panel so that users can quickly access data and tools for the species. Depending on the species, more or less items will be displayed on the resource bar. Below are some items in the resource bars.

Basic Info.

1. Downloads

    FTP links to assemble and annotation files of the species.

2. Genomes

Where whole genome sequences are available, hyperlinks to each genome assembly page are shown on the Basic Info bar.

3. Germplasms & Germplasm detailed page

The germplasms page provides a list of germplasm that are stored in The Asteraceae Database. An interactive map shows the distribution of collected germplasms around the world. The detailed information for each germplasm is shown by clicking on the ‘Name’ or ‘ID’. Images and recorded phenotypes are also store in detailed pages.

4. Publications

Continue to update the latest research publications. User can search latest literature of the species, and filter by key words.

5. Polymorph

SNPs and small InDels are called from 1,313 resequencing data of lettuces.

6. Annotation

Where mRNA, cDNA, protein sequences are available, hyperlinks to each genome annotation page are shown on the Basic Info bar.