Single miRNA

Cti-MIR164d

Basic info.

miRNA locus ID
Cti-MIR164d

miRNA locus accession
PmiREN003291

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01285418.1 10197 10320 -

Comments
A member of family MIR164

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

TAT     --  A                 CA            AA   -     TTTCCTTC
   GGGAG  AG AGGTGGTGTTGGAGAAG  GGGTACGTGCAA  AGC TTCGT        
   |||||  || |||||||||||||||||  ||||||||||||  ||| |||||        T
   CCTTC  TC TTCACTGCAACCTCTTC  CTCGTGCACGTT  TCG AGGTA        
ATT     AT  C                 CC            GA   C     CGTTATTT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.