Single miRNA

Cti-MIR167b

Basic info.

miRNA locus ID
Cti-MIR167b

miRNA locus accession
PmiREN003300

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01009152.1 6606 6741 -

Comments
A member of family MIR167

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

AAA       - -        A     C     G        AAA         AAATCGAAACAAGTC
   CGTGAAG G AGTAGTAG TGAAG TGCCA CATGATCT   CTTTTCTTT               
   ||||||| | |||||||| ||||| ||||| ||||||||   |||||||||               A
   GCACTTT C TCGTCGTC ACTTC ACGGT GTACTAGA   GAAAAGAAG               
CAA       A A        C     T     -        CTA         GTAACACATTAAACT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.