Single miRNA

Cti-MIR168a

Basic info.

miRNA locus ID
Cti-MIR168a

miRNA locus accession
PmiREN003302

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01260940.1 1134 1232 +

Comments
A member of family MIR168

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

     -           T        C          T         TATC
  CGT CACGGCGGTTT CTGATTCG TTGGTGCAGG CGGGAACGG    
  ||| ||||||||||| |||||||| |||||||||| |||||||||    G
  GTA GTGCCGCCAAA GGCTAAGT AACTACGTTC GCCCTTGCC    
TA   A           -        C          C         TACC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.