Single miRNA

Cti-MIRN520c

Basic info.

miRNA locus ID
Cti-MIRN520c

miRNA locus accession
PmiREN003380

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01302342.1 51 201 +

Comments
A member of family MIRN520

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   C    C                   G                    A   ----------------------       ACAA
GGA CACC TGGCAGTTGTTCATCTGGA GGTATGCACATGTGCATACA GTA                      ATGTATG    
||| |||| ||||||||||||||||||| |||||||||||||||||||| |||                      |||||||    G
CCT GTGG ACTGTTGGCAAGTGGGCCT CCATACGTGTACACGTATGT CAT                      TACATAC    
   T    T                   G                    G   TAAATTCAGCAAAAAACCAAAA       ACAC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.