Single miRNA

Cti-MIRN536

Basic info.

miRNA locus ID
Cti-MIRN536

miRNA locus accession
PmiREN003391

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01148262.1 2541 2660 +

Comments
A member of family MIRN536

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                TT               T          G          TCTCTT
  TATGTCAGTCAACC  CGGAATTTTTGTGCT TTCTTTGTGC AATTCCTTCA      
  ||||||||||||||  ||||||||||||||| |||||||||| ||||||||||       
  ATATAGTCGGTTGG  GCCTTAAAGATACGA AGGAAACACG TTAAGGAAGT      
AT              CC               T          G          TTTCTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.