Cti-MIRN539a

Basic info.

• miRNA locus ID
• Cti-MIRN539a

• miRNA locus accession
• PmiREN003394

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01193450.1  234  416  -

• Comments
• A member of family MIRN539

• Confidence level
• 

Secondary strurture and sequence

       A      A  CA CC                   T                -    ----------GGTGG     ATCGCGGAGGATTGA
  GAAGT GAGAAG GA  T  ACCACTCATCCGGTCAATA AGGTGGCTTTGACCGG TTAC               ACGCG               
  ||||| |||||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||               |||||                
  CTTCA CTCTTC CT  A  TGGTGAGTAGGCCAGTTAT TCTGCTGAAACTGGCC AGTG               AGGTG               
AT     A      A  AG AA                   T                C    GGAGGAAATTAACAG     GGATGTACTTAGTGC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]