Cti-MIRN542

Basic info.

• miRNA locus ID
• Cti-MIRN542

• miRNA locus accession
• PmiREN003397

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01243238.1  10239  10450  -

• Comments
• A member of family MIRN542

• Confidence level
• 

Secondary strurture and sequence

        -     CTTA       -      -   ATGGA     GAGAGGGAAAAGTAAG     --    GTAAAGCGTTAATTTGTGGAGCTGAAGGTAGCATTGTTACGGTGAC
 TGGAAAA GATTA    TTGTATT GGATGA CAT     TCGAG                ACGAA  TTAA                                              
 ||||||| |||||    ||||||| |||||| |||     |||||                |||||  ||||                                               
 ACTTTTT CTAGT    AGTATAA TCTATT GTA     GGCTC                ACTAC  CCTT                                              
A       A     ACTC       G      T   -----     ---------------A     AA    GAGTCTTTGGGGATGGTAGTAAAACGACGAACATACTAATAAACAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]