Cti-MIRN543a

Basic info.

• miRNA locus ID
• Cti-MIRN543a

• miRNA locus accession
• PmiREN003399

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01258050.1  169  311  -

• Comments
• A member of family MIRN543

• Confidence level
• 

Secondary strurture and sequence

             -AT                      A     C         -A  NGGAGACCT      GCCG
 AAATGAGAAGTG   AAAAAATACGAAGTAGAGAAGT ATCTC ACCACTCAT  CG         GTCAAT    
 ||||||||||||   |||||||||||||||||||||| ||||| |||||||||  ||         ||||||    C
 TTTACTCTTCAC   TTTTTTATGCTTCATCTCTTCA TAGAG TGGTGAGTA  GC         CAGTTG    
G            GAT                      C     T         GA  ---------      TTTC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]