Single miRNA

Cti-MIRN539b

Basic info.

miRNA locus ID
Cti-MIRN539b

miRNA locus accession
PmiREN003400

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01258242.1 4887 5068 -

Comments
A member of family MIRN539

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

               AATCTCC                     TG           GGTTATG   GACGCGATCACGGAGGATTGACGCGATTC
  GAAGTAGAGAAGT       ACCACTCATTCGGTCAATAAA  TGGCTTTGACT       GTG                             
  |||||||||||||       |||||||||||||||||||||  |||||||||||       |||                             A
  CTTCATCTCTTCA       TGGTGAGTAGGCCAGTTATTT  GCCGAAACTGG       CCC                             
CT             CTATAAA                     CT           -------   AGGGGGGGAAATTAACAGAGGTGGGAGGT

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.