Single miRNA

Cti-MIRN544

Basic info.

miRNA locus ID
Cti-MIRN544

miRNA locus accession
PmiREN003401

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01258404.1 507 741 -

Comments
A member of family MIRN544

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

             TA        CTC                              CCC    AACTAAAAACCCTCTAACTCATCTCTCCATCATTAACCCCTACAAACCCTCAACCGATC
    ACAACTCTA  AGGTGCTC   TGAGGATAGATGATCAAGAAGATCATCTAA   TAGA                                                           
    |||||||||  ||||||||   ||||||||||||||||||||||||||||||   ||||                                                            
    TGTTGAGAT  TTCACGAG   ACTCCTATCTACTAGTTCTTCTAGTAGATT   AGGT                                                           
GGAT         --        ATA                              ---    AGTTTACCAAGAAGTGTACGTAATGTCATACAACCATTTAGAAGTAATAAAGCAAGGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.