Cti-MIRN553a

Basic info.

• miRNA locus ID
• Cti-MIRN553a

• miRNA locus accession
• PmiREN003414

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01077633.1  454  626  -

• Comments
• A member of family MIRN553

• Confidence level
• 

Secondary strurture and sequence

  A   A              C                   AA          GTCACCCTCATTTAA    CTCCAACCTCCATGAA
   GAG AGTGATCTCCACCA TCATCCGGTCAATAAAGGC  CTTTGACCGG               TCAT                
   ||| |||||||||||||| |||||||||||||||||||  ||||||||||               ||||                 
   CTC TCACTAGAGGTGGT AGTAGGCTAGTTATTTCTG  GAAACTGGCC               TAGT                
TTA   A              A                   CC          -AATGTCACCTGCGC    GCCTCCTAACAACGCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]