Single miRNA

Cti-MIRN554

Basic info.

miRNA locus ID
Cti-MIRN554

miRNA locus accession
PmiREN003416

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01103985.1 1897 2051 +

Comments
A member of family MIRN554

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

    T      -                                  CTG   ---  AAGAAG     AAAGAAGAAAGTACC
 TTT CTTTTG TTATATCTTCATTCTCAAAGCATCATATGAGTTC   GAG   GG      TCTTC               
 ||| |||||| ||||||||||||||||||||||||||||||||||   |||   ||      |||||               G
 AGG GGGGAC AATATAGAAGTAAGGGTTTCGTAGTATACTCAAG   CTC   GG      ATTTG               
T   C      C                                  -AA   AAG  ------     CCGGTTGACGGATCC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.