Cti-MIRN555

Basic info.

• miRNA locus ID
• Cti-MIRN555

• miRNA locus accession
• PmiREN003417

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01135159.1  758  981  -

• Comments
• A member of family MIRN555

• Confidence level
• 

Secondary strurture and sequence

CGA    G T    A  ----TAA     T  -     -A     ------------    -  CGCTTATATAGAGAGATTCTTGGTAATAAAGTAAGATGGCGATGGGTTAACAAAAGAG
   TGAG A AGGA GA       TGCGA GA GGAAT  CGGGT            TTTC TC                                                          
   |||| | |||| ||       ||||| || |||||  |||||            |||| ||                                                          T
   ACTC T TCCT CT       ACGTT TT CCTTG  GCCCA            CTAT AT                                                          
 TC    G -    G  TTAGGCA     T  A     GA     TGCAAAAAACAT    A  TTCAAGTTCCTGCTTTGCACAACAAAACCAATTTGGAGTCCCTGGTTTAAACATCAAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]