Single miRNA

Cti-MIRN559b

Basic info.

miRNA locus ID
Cti-MIRN559b

miRNA locus accession
PmiREN003422

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01216406.1 3915 3997 -

Comments
A member of family MIRN559

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

   AAAAGG  -A    A    -   A      T  AA   GTA
 CC      GC  GCCT CCGG TTT GGCTTG GG  GGT   
 ||      ||  |||| |||| ||| |||||| ||  |||    
 GG      CG  TGGG GGCC AAG TTGAAC CC  CCA   
G  GACCAA  AG    -    T   C      -  AA   ACA

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.