Cti-MIRN540d

Basic info.

• miRNA locus ID
• Cti-MIRN540d

• miRNA locus accession
• PmiREN003424

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01049400.1  3802  3933  -

• Comments
• A member of family MIRN540

• Confidence level
• 

Secondary strurture and sequence

     A     -       G              G               TAC          AGCA
 ATAA CATGT TTATGCA ACTGCATAACACAG ACTCGGTATTATGCA   TGCATAACAC    
 |||| ||||| ||||||| |||||||||||||| |||||||||||||||   ||||||||||     
 TATT GTACA AATACGT TGACGTATTGTGTT TGAGTCATAATACGT   ACGTATTGTG    
T    A     T       A              G               TTT          ACTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]