Cti-MIRN517b

Basic info.

• miRNA locus ID
• Cti-MIRN517b

• miRNA locus accession
• PmiREN003440

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01027361.1  55  288  -

• Comments
• A member of family MIRN517

• Confidence level
• 

Secondary strurture and sequence

          C TC   CA  C  A       - A  GCC    G   --  C   A       A              C                  A          ---        T
  TGTGAACT A  TTT  TT TG ACGTGAG A CA   GAAA CGC  CA GTG CATATTC GTTTGAATATTCAT TATTATTCAAACTGAATA CACTGCATTC   GTTATTCA 
  |||||||| |  |||  || || ||||||| | ||   |||| |||  || ||| ||||||| |||||||||||||| |||||||||||||||||| ||||||||||   |||||||| T
  ACATTTGA T  AAA  AA AC TGTATTC T GT   TTTT GCG  GT CAC GTATAAG CAAACTTATAAGTA ATGATAAGTTTGACTTAT GTGACGTAAG   CAATAAGT 
TT        A TA   TC  C  A       C A  -AA    A   TA  A   C       A              C                  C          TCA        T

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]