Cti-MIRN517c

Basic info.

• miRNA locus ID
• Cti-MIRN517c

• miRNA locus accession
• PmiREN003448

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01153759.1  377  566  -

• Comments
• A member of family MIRN517

• Confidence level
• 

Secondary strurture and sequence

          CAT    CA             A  A  C    GA    C                             TAT      AACTGGATA
  TGTGAACT   TTTT  TTGTGAACGTGAG AC GC GAAA  GCGC ATGTGGCATATTCAGTTTGAATATTCATG   TATTCA         
  ||||||||   ||||  ||||||||||||| || || ||||  |||| |||||||||||||||||||||||||||||   ||||||         A
  ACACTTGA   AAAA  AACACTTGTACTC TG TG TTTT  TGTG TGTACCGTATAAGTCAAACTTATAAGTAC   TGTGAC         
TT        ATT    CC             C  G  A    AG    A                             ---      TTATGTCAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]