Cti-MIRN517d

Basic info.

• miRNA locus ID
• Cti-MIRN517d

• miRNA locus accession
• PmiREN003454

• Organism
• Carthamus tinctorius

• Genomic location
• Cti-LUCG01176098.1  6402  6647  -

• Comments
• A member of family MIRN517

• Confidence level
• 

Secondary strurture and sequence

      A  C  TA   CA             A  A  C    G        A               A        -                           ----------    TGAATACAGT
  TGTG AC CA  TTT  TTGTGAACGTGAG AC GC GAAA CGTGCCAC TGGCATATTCAGTTT AATATTCA GTGTTATTCAAACTGAATAACACTATA          ACAC          
  |||| || ||  |||  ||||||||||||| || || |||| |||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||          ||||          G
  ACAC TG GT  AAA  AACACTTGTACTC TG TG TTTT GCGCGGTG ACTGTATAAGTCAAA TTATAAGT CATAATAAGTTTGACTTATTGTGATGT          AAGT          
TT    C  A  TA   CC             G  A  A    A        C               C        A                           AAGCCACAAT    AAAACTTTTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop seqence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

Expression info.

Pri-miRNA expression [+]

Mature miRNA expression [+]

Target gene info.[+]