Single miRNA

Cti-MIRN580

Basic info.

miRNA locus ID
Cti-MIRN580

miRNA locus accession
PmiREN003457

Organism
Carthamus tinctorius

Genomic location
Cti-LUCG01196272.1 406 598 -

Comments
A member of family MIRN580

Confidence level

Secondary strurture and sequence

mature sequence star sequence

5'

3'

                                   CAA               CTTT    ----  GGTCCCCTTTTTTAATTCAATGCTCTCCCATGAA
  CCACTTTTTGGTTGTGAACGTGAGGACAGCCGA   CGCGACACGTGGCGG    GAGT    GT                                  
  |||||||||||||||||||||||||||||||||   |||||||||||||||    ||||    ||                                  T
  GGTGAAAAACCAACACTTGCACTCCTGTCGGCT   GCGCTGTGCACCGCC    TACT    CG                                  
TT                                 CTC               ----    GATC  CGGTGCAGTCGAGGTGCCGCCTACTGATCCGCGC

Get mature sequence
Get star sequence
Get miRNA stem-loop seqence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Expression info.

Reads per million (RPM)

Mature miRNA expression [+]

Reads per million (RPM)

Target gene info.[+]

No target gene.